You can find on this page the list of the softwares I have made and that have been publicly released. Please note that I am not able to offer support for all of the softwares presented here; but the source code are always available for download and modification.

Python

MLLPA

MLLPA (Machine Learning-assisted Lipid Phase Analysis) is a Python 3 library developed to analyse lipid membranes generated during molecular dynamics (MD) simulation runs in order to predict the phase of each lipid and map the local environment of the lipids in the bilayer.

Read More... GitHub

HPyMon

HPyMon is a Python software running with a GUI that is used to collect jobs on a distant HPC and display the list in a user-friendly interface. The software includes many options, such as generation of custom displays of the job list and basic commands that can be send to the servers.

Read More... GitHub

iSCAN

iSCAN is a Python software running with a GUI that is used to analyse the images and sequences collected with an interferometric scattering (iSCAT) microscope. It can be used to calculate the contrast of the objects imaged and track particles diffusing in the image.

Read More... GitHub

microImage

microImage is a Python library that can is used to open and save images in the typical formats used in microscopy. microImage also allows for simple modifications of the images and calibrations of the scale or frame rate in the case of a sequence.

Read More... GitHub

md2stl

md2stl is a Python 3.x module with different tools that can be used to generate a .stl file ready to be 3d printed from a molecular dynamic (MD) simulation input file.

Read More... GitHub

LabVIEW

Sentry

Sentry is a control software for the iSCAT microscope constructed in my current research group. The software is designed to control all the different equipments of the microscope: the cameras, the piezo-electric stage, the LASER light source, the shutter and a spatial light modulator. While the software is specific to our microscope, it is modulable enough to be adapted to any kind of setup.

Read More...

Java

AutoCorrelation Function

The AutoCorrelation function (ACF) is a plugin made for ImageJ which enable the user to perform autocorrelation calculations in both space and time on an image or a sequence of images. The plugin returns the characteristic time and distance of the images.

Read More... GitHub